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When I try to convert my bed-files to the genind-format the converter fails, stating some column is missing. This looks like to be a problem connected to the strata-format.
genomic_converter(data …
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**Describe the bug**
- When using the `multipass.exe` Windows version of the CLI tool, this binary is not supporting any STDIN redirection. Instead it attach directly to the terminal API (or somethin…
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Thanks for developing this method. I've run into a potential bug where Ne estimates are different depending on the input file. I'm happy to share example files if that is helpful.
In short, given t…
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[root@181-12-19-171 examples]# ../bin/SuSiEx --sst_file=EUR.sumstats.txt,AFR.sumstats.txt --n_gwas=50000,50000 --ref_file=EUR,AFR --ld_file=EUR,AFR --out_dir=./ --out_name=SuSiEx.EUR.AFR.output.cs95 -…
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Thanks for this plugin! Saves sooo much time!
I think statically providing plink is bad practice. Everyone can install the official openssh client themselves (“Settings” > “Apps” > “Optional Featur…
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LD calculation, especially when running endpoints with a large amount of regions (either LD clumping or credible set grouping) is quite slow.
Largely this is due to the choice of software: plink is u…
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> > No observable difference with standard GTC input.
>
> I don't observe any difference in the QC_Report.docx. But we do see differences in the corresponding Plink files created (BED…
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```
channels: c, empty, g1, g2,vmm1,vmm2,vmm3,t
enum rolevals {clnt, vm, mgr}
enum msgvals {reserve, request, release, buy, connect, full,complete}
message-structure: MSG : msgvals, LNK : channel
…
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### Contact Details
ks164@duke.edu
### Scripts
10a-gwas_aar.sh
### What happened?
Running fastGWA on twin (MZ and DZ) data gives the following error:
Estimating the genetic variance (Vg) by fa…
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Seems i found a way fixing this what no one else provided before. There are minor differences between Polylang Free & Pro Metaboxes for Gutenberg. My code is optimized for Polylang Pro + Gutenberg + E…