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## Feature request
From the documentation details about `enter_object()`:
> After using enter_object, all further tidyjson calls happen inside the referenced object (all other JSON data outside…
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Hi , I am getting the following error. I was attempting to use a different GWAS sumstat with the test target data and it keeps getting stuck on this error.
Error in rule prep_pgs_lassosum_i:
…
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Hey, it's not an issue, but rather a prospective question, hope someone would be able to answer it.
I'm planning to run several thousand individual GWASs on a set of brain imaging measures within th…
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I am trying to use LDpred-funct in order to generate a polygenic risk score from a summary statistic. I am following the tutorial reported here but I have some questions:
At first, I used S-LDSC in…
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Hello,
I ran the --blup option and I obtained a Beta for each trait that I used in the meta-analysis.
Is there another option to compute also the SE?
Also my understanding from some of the previ…
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Hi @mpinese and @brentp,
upon first attempt using a linux distribution the executable seems not to be finding the libhts.so that is installed at `/usr/local/lib` in my system. My steps were:
in…
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Hi,
I am using LDSC to calculate h2 for a quantitative trait in a European sample. I have performed a meta-analysis with a total sample size of 4740 cases. I obtain a negative h2 (-0.0796), a small…
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### Description of the bug
Hello!
Firstly, thank you for the tool.
I used it long time ago, and now tried to install the newest version (v2.0.0-beta.3) using
```
nextflow run pgscatalog/pgsc_calc…
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Here we consider the types of higher-order **clinical significance** annotations that link 'variants' to 'conditions' to which they might contribute or impact clinical management of, and which we migh…
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I have an issue with some but not all of the individuals I try to run: Of the 90 individuals 30 completed and the rest have the error below:
````
nextflow run pgscatalog/pgsc_calc -profile singularit…