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In #5 I asked about the `bulkSize` option in `runQTLseqAnalysis()` if:
>is it the case that this parameter should be the number of genome copies pooled, which for a diploid it would be 2x number o…
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```
Dear Robert,
I have some issues using snp-frequency-diff.pl, which exits unexpectedly, with
the following message:
Illegal division by zero at
/home/p254319/bin/popoolation2/snp-frequency-diff…
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hi,
thanks for developing this -- it looks really useful.
I had more of conceptual question. In the popoolation manuals it always suggests subsampling pileups to create equal coverage. Is that …
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Hi Lucas,
me again! I have another suggestion that may be useful as you are restructuring your code right now. One common problem with PoPoolation is, that it does not take into account that not o…
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Hi,
I am working with a dataset of pooled natural occurring populations which have been processed in a variant calling (gatk). I have already calculated the different diversity measures per-sample,…
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Hi!
I'm encountering an error when installing the tools through the `python3 mcclintock.py --install`. Everything gets installed correctly but ngs_te_mapper2:
```
INSTALL Installing sc…
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I got the following error while running the example dataset. The file 2R.mpileup.log is empty - possibly a problem with fifo. System administrator checked and mkfifo is definitely installedon the syst…
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Hi, thank you for your contributions!
While I want to install smsk_popoolation after installing anaconda3, I met an issue like the following.
git clone https://github.com/jlanga/smsk_popoolation.git…
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Hello Brian,
When I run trinity it showed this error, even though I installed Jellyfish. What should I solve this problem?
which: no jellyfish in (/isilon/london-rdc/Users/NasrollahiV/Trinity-v2…
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Hello Casey and others,
I have been working with your test data as well as some other data with your pipeline since I've been using your older version of McClintock for quite some time. I was excit…