-
Hi,
I'm trying to download BAMs from dbgap (from cloud) using AWS.
I downloaded jwt.cart file and I used prefetch command to download data (as it described from this page: https://www.ncbi.nlm.n…
-
Hi,
I recently started using the workflows again and I finally got the WPS workflow to work and I noticed that the output has unexpected results near the right end. I am not sure why it is doing tha…
-
Hi,
When I use symbolic links for the normal bams in the normal/bams directory I encounter the following error :
```
Error in runDE(bamFiles, sampleNames, externalNormalCoverageBams, captureRegio…
-
Lims Issue
---------------
**Work Flow:** Twist v3
**Protocol:** Initial QC TWIST v3
**Step:** Qubit QC (DNA) TWIST and Quantit QC (DNA) TWIST
**Description:** Unfortunately the needs in this…
cesve updated
4 years ago
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/hw538/cfDNAPro
Confirm the following by editing e…
hw538 updated
3 years ago
-
[NanoPlot_20201021_1126.log](https://github.com/wdecoster/NanoPlot/files/5414847/NanoPlot_20201021_1126.log)
I am trying to run NanoPlot on data from MinION sequencing of cfDNA basecalled with Gupp…
-
Hi,
I find it very hard to execute your scripts.
Are you working on any packages that allow us to do cf-nucleosome analysis?
Thank you.
-
Hi, I recently stumble upon some issue related to improperly paired reads. From my understanding, they are marked with SAM Flag 0x2, and they need to suffice those criteria:
- 2 paired reads need to …
-
I've got a strange scenario where the ranking of the solutions don't appear to match up with the reported log-likelihood values. Here is the output overview plot when you take the PureCN output direct…
-
HI,
I just have tumor only sample ,without normal.
my data is from target panel sequencing data .
tumor sample type is tissue or cfDNA .
I am not sure cnvkit is whether suita…