-
Hi,
I have been having some problems trying to get `prepare_mapped_reads.py` to run in a "reasonable" amount of time. What I mean by reasonable is before my cluster kills the job after running for…
-
Dear durrantmm
I am using MGEfinder to detect IS6110 of Mycobacterium tuberculosis, which has been long used for DNA fingerprinting of M.tb isolates. I finished analysis of MGEfinder for hundreds o…
-
To infer organisms form the fastQ samples, the top most over-represented organisms in [SRA](https://www.ncbi.nlm.nih.gov/sra) are being selected based on the following parameters:
- Fraction of sam…
-
Hi @oxgiraldo and @miguel-ruano ,
First of all, let me just say this is a very nice tool!
Based on some discussion we had on Tuesday, I wanted to suggest using the ```nanopub``` python library f…
raar1 updated
3 years ago
-
Hi,
Basically, I’d like to make new terms that better represent the MF of the transcriptional regulator, csoR, that the term “copper ion sensor activity” was created to annotate. These new terms will…
-
@mbhall88 has been running "latest" Pandora with the perf changes you 3 produced on the full graph with a cardio sample. So far running for days, sitting in the "get intervals" stage.
@mbhall88 feel …
-
I will take all sequence data that was used in 3 papers that have reservoir data:
1) Disease management at the wildlife-livestock interface: Using whole-genome sequencing to study the role of elk i…
-
Hi,
I would like to retrieve all NCBI bioproject IDs and the related SRAs for bioprojects that were created within a certain timeframe.
I saw the code that retrieves the SRAs for a given bioproje…
-
Hi Caitie,
This may be more of a question rather than an issue. I am trying to alter the threshold set by 'p.value' to look further down a list of significant snps in a dataset with treeWAS. I am see…
-
Hi,
Do you have any resources on how to use the k-mer/unitig color API in Bifrost? I have been playing around with it, and I think I understand it, but I'm encountering an issue where some unitigs …