-
Hi,
I'm using nanopolish variants to polish the draft genome which is the assbemly result by using canu.I use the Illumina sequencing data to polish my draft genome which is named JYF80.contigs.fas…
-
Hi ,I am using Canu for my nanopore sequence correction , and my command is like `~/canu-2.1/bin/canu -correct useGrid=true gridEngineArrayMaxJobs=500 -p test -d canu_zl genomeSize=1.3g -nanopore …
-
https://cfde-training-and-engagement.readthedocs-hosted.com/en/latest/Bioinformatics-Tutorials/GWAS-in-the-cloud/background/
> Researchers identify two groups: one groups of people with a disease c…
-
Hi Hamazaki,
I want to analyze for genome wide epistasis with a dataset of 664 individuals and 11000 SNPs. I ran the analysis with demo data and it works great but when I use my data I get this err…
-
Hi,
I have been using Merqury to assess a trio-binning assembly. The first three steps successfully completed. However, two phaseblock steps generate files with no data.
I checked result.phase-bloc…
-
Dear Stephane,
I am working on a RNASeq project with multiple chicken populations and multiple tissues per population for a total of around 700 samples.
Our wish is to do ASE analysis per populati…
-
e.g. 14201 (below)
[14201_m_pheno.txt](https://github.com/zqfang/HBCGM/files/5105130/14201_m_pheno.txt)
[14201_m_strains.txt](https://github.com/zqfang/HBCGM/files/5105131/14201_m_strains.txt)
byoo1 updated
4 years ago
-
Just installed 1.3.2. Tried to run run_hapcut2_fosmid_data.sh but it fails when it tries to download:
http://www.molgen.mpg.de/~genetic-variation/SIH/Data/haplotypes.tar.gz
because ~genetic-v…
-
Hi Peter,
Thank you very much for previous suggestions about splitting haplotypes from Pacbio derived reads using prune_haplotype.py. It devided ~4000 blocks into ~6000 blocks after splitting based o…
-
Hi there,
last year I asked Alex and he kindly add support for .3dg format (commit: 901fac97), i actually developed a new binary format based on that with small modifications...i named this format …