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This issue is raised to port TreeLogAnalyzer from BEAST1. This has been partially done already by Tim into BEASTLabs, but this tool should be in the core so it can be deployed with future releases.
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Create new lphy extension to use beast2 nexus parser.
Maybe, other models, which can save many development in simulations for new Generators.
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From Jeff Chang:
>Hi Richel,
>
>Thank you very much for creating the babette package. I am really enjoying using it to generate phylogenies from BEAST2.
>
>I am generating some rather large tr…
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Hi,
I'm trying to compile my package and do some testing on a HPC by following the instructions from [Writing A Beast 2.7 Package](https://www.beast2.org/package-development-guide/writing-a-beast-2_7…
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Hi rbouckaert,
I am having a little trouble trying to get the installation instructions working. I have run into some issues and was hoping to get some clarification about:
1) the newest release…
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Sequencing error models (and post-mortem damage models) are implemented in BEAST1. See http://mbe.oxfordjournals.org/content/26/2/245.full
Users would like this ported to BEAST2.
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Hi! Hope you´re all fine.
I converted my .fas file to a .nex file using http://phylogeny.lirmm.fr/phylo_cgi/data_converter.cgi. The .nex file worked normally using BEAST 1.10.4, but when i try the …
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Hello,
Anyone have this kind of error before when running BEAST2? Do you know how to fix this issue?
I'm using BEAST2 version 2.6.7, not sure if it's something about software version or java.
…
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I tried to run BEAST2.6 with CUDA and OpenCL.
After install beagle, opencl, and CUDA.
I can not use CUDA with arguments ``-beagle_CUDA`` or ``-beagle_opencl``.
clinfo show CUDA and OpenCL have inst…
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I just tried to run beast2 and BEASTLabs in Eclipse without restricting it to an old compatibility level of Java version, but I can't. The error is
The package beast.app.tools conflicts with a …