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Evidently `biolink:BiologicalEntity` has been turned into an abstract class. We need to verify this, and if so, make the necessary changes to `curies-to-categories.yaml`. Slated to be addressed in the…
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See also my Slack SMBD thread (~12/20/2021).
### Relevant OBIS, GBIF, NERC DwC resources
- http://www.marinespecies.org/traits/wiki/Traits:Lifestage
- https://registry.gbif.org/vocabulary/LifeS…
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A user asked us to create a new P01 code for terms that qualify the reproduction status of an organism (e.g. Reproduction status of biological entity specified elsewhere). The user quoted terms such a…
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I wrote these comments somewhere else:
" Quantization is the enemy of evolution
It is fortunate that biological systems are heavily quantized, especially in bacteria and viruses. An…
ghost updated
8 months ago
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Hi, I have a simple question about the example of loading the gene score information prior application:
```
# load adata
adata = sc.read_h5ad("data/expr.h5ad")
# subset gene sets
df_gs = pd.r…
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From a biological standpoint, the computational bottleneck highlights the challenge of dealing with vast amounts of genetic data to predict complex traits.
Section 2.1 of [this paper](https://www.nc…
hrluo updated
3 months ago
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Hi,
Thanks for this pipeline! I am running it and having trouble with the predict_metagenomes.py step. When I the normal predict_traits.py command you recommend and then add the KEGG I get the fo…
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### Discussed in https://github.com/Data4DM/BayesSD/discussions/192
Originally posted by **hyunjimoon** February 22, 2024
Q1. there's difference between voluntary environment change (update ph…
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At the end of every week (after our meetings), we should provide a summary of the work we have done in the last week, in 4 - 10 bullet points.
@rays22 can you please, for every week, make a commen…
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Hi!
I was just talking to @Daniel-Mietchen and would like to update the https://opentraits.org website before the lightening talk at the Ronin Institute of Independent Scholarship at 8 Dec 2022.
…