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Hi,
After I got help from @dariober , I finally runned cnv_facets sucessfully.Appreciate! The output included a plot. I have several questions:
why was the purity value NA in all of my sample? the…
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`chr11 69212123 Minda_19 N . PASS SVLEN=364954;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:182784:0:1:0:0:0,ILL_gridss188bf_155h,PB_severus_BND1178_2,ONT_severus_DUP1280,PB_ID_49027_2,ILL_2193678532:2,PB…
jzook updated
1 month ago
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Hi,
I am working with mouse B cell repertoires processed with MIXCR (for consistency for this project I am still using MIXCR v3.0.13). The alignment was done on the VDJregion so I can export all th…
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`chr3 184714600 Minda_100 N N]chr3:184717314] . PASS SVLEN=2714;SVTYPE=BND;SUPP_VEC=PB_severus_INV4929,ONT_severus_INV5695,ONT_ID_12265_2,PB_ID_53334_2,ILL_95621117:2,ILL_gridss67bb_12113h,ILL_MantaBN…
jzook updated
1 month ago
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Dear all, I am using CNVkit to analyse exome sequencing data (germline samples) in order to find new copy number variants. For the pipeline analysis I followed all the found suggestions for germline s…
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I have a question about how to interpret the output from add_to_seurat. I got two files called top_duplis.txt and top_losses.txt. Could you briefly explain what information these two files store? What…
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`chr10 25515229 Minda_8 N . PASS SVLEN=514;SVTYPE=INS;SUPP_VEC=ONT_severus_INS10477,ONT_Sniffles2.INS.12EM9,ONT_i_32,ONT_ID_48081_1,PB_severus_INS9071,PB_Sniffles2.INS.130M9,PB_ID_18566_1,PB_i_88
`
…
jzook updated
1 month ago
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## 🐛 Bug
I am currently trying to analyze BCR sequencing data by using IMGT HiV-QUEST data before using immunarch for further analysis. I should note that I am analyzing BCR data from Rainbow Trout (…
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## ❓ Questions and Help
We have a set of [listed tutorials available on the website](https://immunarch.com/articles/).
Hi Immunarch team,
I have IMGT output data from bulk BCR-sequencing in the…
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Kristian just explained what's going on in [this](http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004870) paper, and it turns out to be precisely what we need to do with unseede…