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I am trying to apply CNVkit to detection of sCNAs (somatic copy number alternations) with clinical samples.
Now, as a test I am trying to detect the sCNAs in HCC1395 cell line. I performed copy numbe…
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#### What are the scientific goals of the analysis?
The scientific goal of the analysis is to gather evidence needed to validate whether or not the way we handle the copy number data in this pr…
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Hello, I am Sanghyun trying to make use of EagleC.
I am just an end user of bioinformatics.
When using predictSV, I encountered an error described below.
I'm asking here because I couldn't fi…
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If I manually split a 300kb seed into two 100kb seeds, what is the difference in the AA running results?
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why remove the cluster process in reference command ? different cluster should have more power to detect CNV?
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Hi,
I am using copykat to calculate CNV on a cancer sample, and results showed that not only cancer cells, but also there were a lot of macrophages with CNV.
Could macrophages have CNV in cancer sa…
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so pleased to use this,but i wonder whether this vae could be used on cpu not gpu？hope for your request
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I was trying copyVAE on two different datasets to get an idea for its performance and noticed a few small things that I wanted to point out, as potential improvement suggestions or in case someone els…
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Solid work here. Having VCF output puts this well ahead of other FACETS wrappers I've seen. `cnv_facets` currently uses FACETS `v0.5.14`. Do you have plans to update this? [Here is a list of changes](…
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