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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/722
### Describe the goals of this analysis module.
To use CellT…
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In "Differential Expression Analysis for CCC & Downstream Signalling Networks" part ,
i met following error:
Is CORNETO installation incompatible with LIANA?
########1 i have tried used 2 ways t…
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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After install,I test your code `data('AD_data')
ad.count
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Dear @Vivianstats ,
Could you kindly explain briefly how scLink can be used to perform differential co-expression analysis between case and control samples similar to what you performed using the brea…
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Straight from live output. I used the weirdest genotype names I could get. Other than that, should be a standard wt vs mt analysis. It seems that the genotype names may be throwing some errors, but th…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.4.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No re…
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Hi,
The program successfully predicts the fusion gene in the ceil line but I would like to do some downstream analysis to compare the expression for this fusion gene between samples.
Are those ju…
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Hello @brianjohnhaas
I'm doing DEG recently. Refer to the reference steps, I found that there seems to be some problems with the R installation application package in linux (as shown below).
![I…
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Hi Alex,
Thank you so much for your great tool!
I have a quick question concerning the STAR `--twopassMode Basic`.
Which strategy (STAR with or without `--twopassMode Basic`) would you recomm…
JJBio updated
2 years ago