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Dear developer,
We would like to perform TWAS analysis on a plant population. Our data consists of phenotypes, whole-genome gene expression levels, and genotypes for each sample.
We do not have …
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Having this type of error on the ANTLR scope is really bad, because it is never able to provide a useful error and many times this breaks parsing of anything below the partial expression. This is a ve…
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This pipeline uses an expression matrix produced by microarray or RNA-seq analyses. As a starting point, we provide an expression matrix for Arabidopsis
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# Grading Assessment for Yixuan Huang
## R Script Components
### 1. Data Loading and DESeq2 Object (1 point)
Score: 1/1
### 2. VST and PCA Implementation (1 point)
Score: 1/1
### 3. PCA …
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I think your proposed experiment is well designed, has an adjustable scope that you can expand on later down the line, and has very clear short- and long-term goals.
I have a minor proposition. Wha…
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### Is your feature request related to a problem?
Is there a way to do differential expression of transcripts (e.g. similar to DEseq2 but for transcripts) with RNAlysis?
### Describe the solution yo…
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- Plugin version 1.2.0
- RustRover 2024.2.1
- Slint 1.7.2
The `@tr("Some text")` syntax is not recognised, issuing errors in the code analysis panel. The actual markup seems to survive mostly fin…
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Taint analysis appears to loose taint whenever assignments to pointer aliases are involved.
This first example is very simple but the flow from `source` to `sink` is not found. It appears to me as …
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Hello,
After reading your paper, I became very interested in Omicverse. After learning more about it, I found that Omicverse provides great convenience for data analysis. However, I encountered some …
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Currently, if a `policy_expr` has a JSON pointer (most all of them do), we can't parse the expression into the structured `Expr` type until the analysis completes and we have the value to insert at sa…