-
[summary.txt](https://github.com/user-attachments/files/17161668/summary.txt)
Thank you so …
-
I am trying to create a consensus sequence (or consensus sequences for a few of the most abundant morphs) for the rDNA repeats of several mammal species that do not have existing rDNA reference sequen…
-
Hello,
I'm new to whole genome assembly using ONT reads. I have two questions.
Suppose the consensus sequences identified during the inference are not adapters but are important to the project …
-
Hello,
I have some CAGE sequencing data from oil palm. The reads were mapped to the genome. I have alignment BAM file, and converted into BigWig. I have problem running quantifyCTSSs because I couldn…
-
Hi, I can't see the fragments files in 1_data_repository/full_fragments like stated below. Can you help me with his please?
> For each experiment, the full sequencing data was then aligned to the r…
-
Dear team Genomescope2.
I am using the tools to understand why I have a bad novo assembly, with more than 1M of contigs and small.
I have illumina sequence of Cavia Porcellus (guinea pig), geno…
-
Download reads from [Sequence Read Archive (SRA)](https://www.ncbi.nlm.nih.gov/sra) for an organism with a good reference. If that has a high SNP count then it is a pipeline issue.
-
- [x] Remove all donwstream analyses e.g., DeSeq & PCA
- [x] change script [[count-matrix.py](http://count-matrix.py/)](http://count-matrix.py/) line 40 sep="\t" to sep = ","
- [x] switch to one s…
-
This is a proposal to modify the KBase file staging service and its UI to recognize and parse DTS manifests and import their contents to KBase Narratives. The CE/DTS team believes this is the simplest…
-
Dear PBSIM3 maintainers,
I am YU Zhejian from the Zhejiang University-University of Edinburgh Institute. Our group has been using PBSIM1/2/3 to simulate long-read RNA-Seq reads (with [YASIM](https:…