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### Background
DNAplotlib is a Python library that enables highly customizable visualization of genetic circuits for synthetic biology. DNAplotlib is capable of rendering both nucleotide-level repr…
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### Background
The [Inventory of Composable Elements (ICE)](https://github.com/JBEI/ice) is an open source registry platform and biological data repository that is widely used by numerous academic …
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### Background
[Cytoscape](http://www.cytoscape.org) is a highly popular open source bioinformatics software platform for visualizing, analyzing, and publishing graphs or networks representing molecu…
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SBML4Humans
### Background
The Systems Biology Markup Language ([SBML](http://sbml.org)) is the de facto standard for encoding computational models in systems biology. SBML is a XML based marku…
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### Background
[Cytoscape](http://www.cytoscape.org) is a highly popular open source bioinformatics software platform for visualizing, analyzing, and publishing graphs or networks representing molecu…
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There's demand for making it possible to use images as backgrounds for nodes. For example, see the discussion on this issue:
https://github.com/nrnb/GoogleSummerOfCode/issues/47
Even if we don't i…
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### Background
Xconnector is a software package designed to easily retrieve, and visualize metabolomics data from different database sources. The goal of Xconnector is to connect different metabolo…
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### Background
CellDesigner (http://www.celldesigner.org/) is a tool for drawing and modeling biological networks. CellDesigner has a plugin (https://academic.oup.com/bioinformatics/article/27/24/343…
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### Background
The BIMIB and the SYSBIO groups at the Universita` degli Studi di Milano-Bicocca have constructed a series of algorithms and tools to study the Metabolic Rewiring of Cancer cells. T…
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### Background
Modeling in systems biology often requires scripting and drafting models and simulation procedures. Many programs have been designed for this purpose. The *de facto* standard format fo…