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ENCODE is using a new .hic format. How does hic2cool handle/read .hic files? Easiest option would be to use the latest version of [straw](https://github.com/aidenlab/straw/tree/master/pybind11_python)…
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Hi,
Has anyone come across problems to read the mcool files converted by hicexplorer? Not sure what went wrong, can someone give some hints where should I change in mcool?
Thanks!
First, I fi…
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Hello,
I am trying to run HicBuildMatrix on a conda install.
Conda environent was installed was per version specifications given.
Thank you,
Manoj
The command is
module load miniconda
conda …
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When I try to run hic2convert with _more_ than one processor, I get the following error -
```
Traceback (most recent call last):
File "/Users/aakashsur/.virtual/default/bin/hic2cool", line 8, …
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Hello,
I got an error trying to use hicDetectLoops.
Command :
``
python hicDetectLoops -m /NANO/Result/Matheo/MCF7/distiller/pipeline_output/MCF7_distiller.cool -o ~/results.bedgraph
``
H…
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Hi !
i know this issue supposed to be solved but it seems not. i tried install and run hicexplorer in two ways (with git and conda), in all situation i have the same error while trying to run hicBui…
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```
Job in error state.. tool_id: hicexplorer_hictraintadclassifier, exit_code: 1, stderr: Fontconfig error: No writable cache directories
Traceback (most recent call last):
File "/usr/local/bin/…
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Hi,
I downloaded the new version of HiCExplorer with conda and then also did:
git clone https://github.com/deeptools/HiCExplorer/
cd HiCExplorer
git checkout aggregateGenome
hicex_git_dir=$(pw…
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Hi,
I was wondering if I can plot the TADs in circos format in pyGenomeTracks, similar to the attached screenshot? I'm using the following version of hicExplorer.
--Python3/3.9.0
--hicexplorer/3…
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Hi,
I'm trying to run hicCorrelate on my set of 4 raw matrices with a bin size of 500 kb, and keep getting an error "arrays used as indices must be of integer (or boolean) type" as below. I've also…