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Hi everyone, I got the error when I run Trinity. How can I resolve this?
Trinity version: Trinity-v2.8.5
-ERROR: couldn't run the network check to confirm latest Trinity software version.
Thursda…
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-searching for indexed reference genome to decrease computational resources needed for indexing
- links :
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_a…
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- [x] Star-Stringtie-DESeq2
- [x] Star-Stringtie-EdgeR
- [x] Star-Stringtie-Ballgown
- [x] Star-Cufflinks-Cuffdiff
- [x] Star-Cufflinks-Ballgown
- [x] Star-HTSeq-DEXSeq
- [x] Star-Featurecounts-…
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I am using hisat2 version 2.1.0.
Command i using -
1 - For indexing
hisat2-build /index/Hg38_new.fa HG38
2 - For alignment -
hisat2 -p 8 --dta -x HG38 -1 sample_1.fastq.gz -2 /sample_2…
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Hello,
I encountered the following error during the execution of my circular RNA analysis pipeline:
```bash
Indexing .bam file...
open: No such file or directory
[bam_index_build2] fail to op…
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**Version info**
- bcbio version (bcbio_nextgen.py --version): 1.2.2
- OS name and version: Ubuntu 18.04.4 LTS
**To Reproduce**
- Exact bcbio command you have used
/usr/local/bcbio/anaconda/…
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Hi, I want to use trinity in my transcriptome research, but I meet an error about using multithreading. Here is my error log, could you give me some advise, thank you very much.
The output (if an…
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Dear,
I would like to kindly ask you to clarify in the manual the use of the --repeat function which currently seems somewhat lacking. In particular, what does it do? how does it work? and how should…
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When I try to build the index of dog genome and transcripts (ss and exon), the hisat2-build (2.0.5) is always failed. The error shown is "Could not find approrpiate bmax/dcv settings for building this…
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Hi,
I am having an issue with refgenie pull. This is a fresh install of refgenie on a server running CentOS7. Basically what happens is that if I try to do a refgenie pull, it seems to connect with…