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Hi KB,
I tried getting sparse matrix files using kallisto-align.
I run kallisto index using the kallisto distributed with kallisto-align with no problems then I run kallisto-align like this
k…
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### Description of feature
Hi, I couldn't run the pipeline on some smart-seq datasets which contains only single-end fastq files. I tried with two different samplesheets and get an error that fastq_2…
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Hi, I've tested the [Kallisto-Quant.cwl](https://github.com/common-workflow-library/bio-cwl-tools/blob/release/Kallisto/Kallisto-Quant.cwl) with
```yaml
InputReads:
- class: File
path…
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Hi
It is great to hear the support for long-reads coming to kallisto I would like to introduce it to our pipelines
I have few question regarding running lr-kallisto on ONT dorado basecalled rea…
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I get a "permission denied" error when I try to run kallisto with the opilio transcriptome. I tried re-running kallisto on the bairdi transcriptome that I had gotten to work before but am getting an e…
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Hello,
I was wondering if you have example command line commands or bash scripts you used for preprocessing with Kallisto bustools. Thanks!
Best,
Anna
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Hi, I have been using Kallisto-sleuth for my RNA seq analysis and I had a discrepancy in my analysis. I had mentioned it as an issue on Git hub #100(reverting back as I couldn't find an explanation). …
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Hello Kallisto developer,
Thank you for this excellent tool. I would like to know if Kallisto works on Parsebio split-pool snRNA-seq, which I have heard the rumor for quite a while. If you can kind…
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Kallisto can be [installed](https://bioconda.github.io/recipes/kallisto/README.html) using bioconda.
To run first download transcriptome and generate index (you may want to modify for b37 instead o…
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CIBERSORT web interface: https://cibersort.stanford.edu/