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Hi,
Thank you very much for this wonderful package. I was trying to create Manhattan plot using Alzheimer's disease GWAS data with the following code (GWASLab v3.4.31);
```
mysumstats = gl.Sums…
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When summarizing the results of the coding region, what is the difference between the "results_temp" and "results_m" results?
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Hi,
I am using the latest EPACTS and managed to solve many dependencies i.e aclocal 1.4 and gcc 5 from EPACTS google mailing list.
I don't have any issue when running the association tests and …
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Hi,
I would like to know if the script can handle other organisms than humans.
I tried to use it with result from Drosophila (less chr and different position numbers) and I get the following error…
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**Aim**
To generate Manhattan plot with plotGrandLinear function
**Script**
library(GenomicRanges)
library(ggbio)
library(readr)
library(tidyr)
library(dplyr)
input_dir = "/mnt/d/NGS/r…
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Is it possible to break axis in the Manhattan plot region of circos plot in FUMA output so that we can see zoom in view of just GWAS significant locus?
Help will be appreciated.
Thanks.
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Hello,
I successfully plot a Manhattan plot using `plotManhattan` and was able to annotate the lead SNP with the `leadSNP` parameter.
I would like to plot multiple SNPs with their rsID and I want…
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Hi,
Thank you for this wonderful software. However, I'm getting below error during plotting the pytor file in manhattan. It will be an immense help if you kindly suggest where I'm getting wrong an…
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Hi! I would like to make a figure where 3 different mqq plots (coming from different summaries statistics) are displayed in 3 different rows. Is this possible?
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Check what makes more sense:
- Use matplotlib for "Manhattan skyline"
- Create "raw" bitmap by hand