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Hi Vadim,
I hope you're doing well. I'm encountering an issue while running DIANN on a Linux-based HPC cluster. Occasionally, the analysis crashes with the following error:
Segmentation fault (c…
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Maybe in a colored box e.g. something like
In this section, you will learn:
- how to load, process and store mass spectra and chromatograms
- how to plot spectra
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DDA MS/MS defines the precursor that was used to trigger the MS/MS event, and defines the precursor mass as the trigger mass. However, every MS/MS event has a mass isolation window - i.e. a lower mz …
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Hi MSGF+ Team
Thanks for your work in MSGF+.
** I get mass spectrometry data from Bruker TimsTOF and want to do database search using MSGF+.**
**At first, I convert the *.d files into mzML. …
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Hi,
As follow up to a discussion of Herbert and Martin, they suggest to include the scan range as a new tag in the record format, e.g. AC$MASS_SPECTROMETRY: SCAN_RANGE MS2 100-1000
Alternatively, …
tsufz updated
4 years ago
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Hello, similar to #1872, I have LCMS data in which both mass and absorption spectra (from DAD) are recorded into a .wiff and .wiff.scan files (I can view the full absorbance matrix in Analyst software…
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I recently began using the Linux platform for work. I considered using our server, which is running Ubuntu 22.04.4 LTS, to run DIA-NN.
_I installed .deb version._ I converted .wiff to .mzml and kept …
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We have run a low resolution MS analysis on the newest sample we obtained from Barker College last week (see below). No identifier was given to the compound so I've given it BC-2020-5 (@katieterrett …
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In graph construction, , how to generate a psm header file from any original .mgf file?
When I do graph construction with the supplied "A_Thaliana.csv" and "A_Thaliana.mgf" under the same folder, …
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Hi,
pLink2 keeps getting stuck at this point below. I have checked that the files are in the folder ( See image, e.g. 2aRB_HCDFT.pf2). I have uninstalled and reinstalled MSFileReader. I would appr…