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Looking across the notebooks, the “Purpose of the analysis” section is usually a single sentence, and does not usually give any "why". For example, the for PCA for 02-microarray/dimension-reduction_mi…
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@lilyclements We currently have a Describe > Multivariate menu, which has only a limited number of methods within it.
One of them is PCA and this uses the FactoMineR package. We were asked about M…
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I ran four comparisons in parallel on the same samples using limma-voom:
- unpaired analysis on idep
- paired analysis on idep
- unpaired analysis using a personal script
- paired analysis using …
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Hello, I am trying to plot my cluster assignment and saw this example code on your documentation:
```
ggplot2::ggplot(res$complete_data,ggplot2::aes(x,y,color=factor(res$clusters))) +
ggplot2::g…
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Hi,
When I run Velocity analysis with the pancreas_sub data,
```
pancreas_sub
jphe updated
3 months ago
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From Chris Shults (+ my edits for gEAR purposes)
gEAR would be most useful for users to compare their scRNASeq or scATACSeq data to for cell annotation. They should directly take the unlabeled clus…
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**Is your feature request related to a problem? Please describe.**
The goal of this issue is to enrich the text analysis of dataprep.eda.
**Describe the solution you'd like**
1. plot(df, x): me…
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I want to perform the PCA analysis and get results with the magnitudes of motion indicated by arrow length and color as quoted, and I saw the "color arrow by mobility issue was closed with #38 before"…
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Looking at Visumap, the majority of those algorithms are found in scikit-learn or scikit-bio, namely
**Ordination**
- [SMACOF](https://github.com/scikit-learn/scikit-learn/blob/master/sklearn/manifol…
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Thank you for all your work on this project!
I could not find FA Widget in your catalog [1]. If not there, are there any plans to implement it? As you may know, sklearn already has it [2][3][4]. Th…