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Hi Sam,
Thanks for the great tutorial. I have been trying PLINK for the polygenic risk score. However, with the height dataset and EUR plink files, I am not able to reproduce the results. Especially,…
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### Description of the bug
I have an issue with some but not all of the individuals I try to run: Of the 90 individuals 30 completed and the rest have the error below:
### Command used and termi…
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Hello,
I am doing this part of your code:
i in {1..22}; do ./plink --bfile ./imputed_plinkfile/1Mv1imputed_chr${i} --extract ./Imputed_1000G/chr${i}exclude.txt --make-bed --maf 0.05 --geno 0.05 …
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Can I use univLogReg or any functions here to test additive effects of several genotypes?
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Hi! Thanks for using the PGS Catalog calculator (`pgsc_calc`).
If you need help with setting up the calculator, configuration options, or have questions about polygenic risk scores generally, the …
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I'm working on getting some additional functionality from PolyFun working in the `echofinemap::POLYFUN` wrapper.
The issue I'm running into is that `rpy2` doesn't' seem to be able to find the require…
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### Description of the bug
Hello, first of all, congratulations on creating such a comprehensive tool like pgsc_calc. I have been trying to set up the analysis and encountered an issue that I don't u…
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### Description of the bug
I ran the current version of pgsc_calc with 63 scorefiles on a single sample and got this error:
```
FATAL: container creation failed: mount /proc/self/fd/4->/usr/l…
Fiwx updated
2 months ago
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### Description of the bug
I've run into issues calculating some of the scores from the PGS Catalog when I indicate their IDs with the `--pgs_id` parameter. Specifically:
1) PGS004255, PGS004256,P…