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**implementation features: run visualization without having Cytoscape open**
current set up:
-~~open Cytoscape desktop app on computer~~ fixed
- move to ``visualization_scripts`` directory
- r…
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Hi. I was wondering if it made sense to make igraph an optional dependency? It can be a pain in the neck to install on some systems and as far as I can tell, it's only relevant for `from_igraph()` in …
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As of today, there is no function for "merging networks" in CyREST.
Once that work is done, we will add to RCy3 and py2cytoscape.
We have a beta version of the update and are testing it now.
kozo2 updated
3 years ago
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I see a deprecation warning for using any of the entries to py2cytoscape.data. Are there any examples of doing the same type of function calls without it? I have started to use the cyclient api direct…
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When importing cyrest, I've got :
```
from py2cytoscape import cyrest
Traceback (most recent call last):
File "", line 1, in
File "/usr/local/lib/python2.7/site-packages/py2cytoscape/cyrest/…
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kozo2 updated
4 years ago
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kozo2 updated
4 years ago
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Once https://github.com/conda-forge/igraph-feedstock/pull/7 lands, it should be relatively straightforward, right?
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Hi,
I've noticed that creating a network on cytoscape using igraph and py2cytoscape causes nodes to overlap over one another. Is there a way to prevent this via command line?
Thanks!
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With the release of Cytoscape 3.6, commands can be accessed via POST. Making the python and R libraries use POST would provide a fix for #18 and the fairly regular occurrence of users running out of r…