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- [] Ask Kamesh and Cecilia about the units of our dataset
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Hello there,
Thank you for a wonderful software. I am trying to use finder with RNAseq data which resides on my local machine. From the logs it seems that its actually not running the STAR alignme…
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hello, I'm using cell2cell to identify interactions with scRNAseq data.
```
interactions = c2c.analysis.SingleCellInteractions(rnaseq_data=rnaseq,
…
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### Description of feature
Hi, I couldn't run the pipeline on some smart-seq datasets which contains only single-end fastq files. I tried with two different samplesheets and get an error that fastq_2…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.4.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No re…
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I'm wondering if there is concise documentation somewhere for reproducing the exact analysis of the TCGA/GTEX data in this [paper](https://www.nature.com/articles/nbt.3772) (but with new samples).
h…
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Just below the 10.2 Dimensionality reduction (Section 10 Lessons) and Data import and exploration (Section 10 Practice), the notebooks barf with path or missing file problem:
Line context:
```
…
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Nice tools! tricycle can also be used for bulk rnaseq data analysis?
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Hello @Beifang -
I am an avid fan of MSIsensor and routinely use it in the calling of MSI status from exome sequencing data. Recently we have started to switch our analysis to RNAseq data and I wa…
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#### What analysis module should be updated and why?
The following analysis modules are missing `README.md` documentation files:
+ `copy_number_consensus_call/`
+ `sex-prediction-from-RNASe…