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Hi Seurat team,
I am running through the steps in the pbmc-tutorial.Rmd file on a dataset from the dropseq paper (~49k cells). At the FindClusters() step I encountered the following error:
`> …
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output:
```
ERROR ~ Error executing process > 'parse_runs (library:strain_2 run:lane1)'
Caused by:
Cannot invoke method toBoolean() on null object
Source block:
dropsam_flag = params['…
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Hello,
I wanted to try out your software but it seems it doesn't work on python3.6. Here is the error log. I installed in python2.7 in the meantime where it works perfectly.
Thanks a lot for you…
Hoohm updated
7 years ago
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Hello,
I'm trying to use your tool to handle our single cell drop-seq data.
The method is using paired reads but the pairing is not on the gene itself, meaning we're not doing paired end sequencing,…
Hoohm updated
7 years ago
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* need to work with Green Box to understand query needs
* need to prototype with Michael
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Would be really cool to have an import method for the 10X data similar to `Read10X ` function of Seurat (https://github.com/satijalab/seurat/blob/master/R/seurat.R). Installing Seurat just for this si…
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Dear @rust-bio/contributors, @MikkelSchubert, @mbrubeck, @veldsla, @bpr, @rednum, @natir, @flying-sheep, @althonos, @llogiq, @eclarke, @skade, @parir, @marcsch, @bow, @apirogov, @mahdi-b, @audy, @mari…