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Over the last few months there have been a number of passionate debates in this repository about new exercises and changes to the existing exercises. Maintainers often have very opposed views and cann…
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Dear Nesvilab/FragPipe group,
Thanks a lot for making FragPipe available for us! We really appreciation
This is a couple of general questions about FragPipe:
Question 1:
Are we allowed to set …
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Dear IonQuant developers,
I cross compared the quantification results obtained by running
a) FragPipeGUI -> MSstats
b) MQ -> MSstats
on a published PASEF dataset with _a priori_ known sample…
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**Is your feature request related to a problem? Please describe.**
I am generating an .mgf with pseudo spectra from DIA data (not with DIA-Umpire). I would like to (i) run MSFragger search on these a…
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Submitted by hendrikweisser on 2013-12-09 17:51:39
I have noticed some oddities in the code that is used for label-free quantification by FeatureFinderCentroided. It would be good to check whether th…
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When two lines have the same "title" AND "year" AND "authors" keep only one (the first? the most complete?)
Below the three key in ISI and SCOPUS:
- title --> ISI = TI / Scopus = Title
- year -->…
tommv updated
4 years ago
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Hello, I have ran TMT-Integrator 1.1.0 using psm tables I obtained from Philosopher.
I have changed reference channel tag in parameter file into TMT126, but I got this error. Can you tell me where…
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Hi there,
Thanks again for a very useful tool.
Is it possible to add to the intensity-based label-free quantification the option to include also peaks identified following matching between different…
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Hi, I used FragPipe to search phosphopeptides from MS data from TimsTOF pro, and got the identified phosphopeptides.
I am confused that how do I know the position of phosphorylated amino acid in t…
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log/validation/1-20190730-3007-RESUB2-validation.log keeps on failing with unknown error.