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See conversation starting here in slack:
https://humancellatlas.slack.com/archives/C75G0R97E/p1534977101000100
Tony notes that there is no requirement for cell_suspension to be in every primary b…
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Suggest changing the following accepted enums for `end_bias` field:
- `three_prime_end` to `3 prime tag`
- `five_prime_end` to `5 prime tag`
- `three_prime_bias` to `3 prime end bias`
- `five_prim…
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When I run read.smartseq2.bams as noted in the documentation, I get the following error:
> dat
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# Why
We are experiencing too many build failures. As a developer I would like to have confidence that new code submissions would not be delayed by test failures in unrelated areas.
# DoD
- [x] cata…
kozbo updated
6 years ago
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I get the following error message when I try to read in smart-seq2 bam files. It seems that velocyto doesn't like the GTF, but I can't figure out why. I obtained the GTF by downloading the hg19 "ucsc …
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hi there,
I am using Mocole and have around 700 cells and ~ 13000 expressed genes and 13 clusters after filtering out and running DDRTree. While running differentialGeneTest it is taking too long.…
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Will using C1 data from SMARTer protocol that has not UMIs incorporated also be possible?
I have run the source code from bam files line by line, setting min.umi.reads=0 but atm my final matrices (em…
mliiv updated
6 years ago
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Hi Mike,
We were testing tracer summarise version 0.5.0 with the results that you provided in tracer/test_data/results/. This directory contained only folders cell2 and cell3. We got a KeyError: 'c…
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Hi!
we are currently trying to use MAST for a dataset of 443 pancreatic alpha cells from 6 different healthy donors (136,92,117,44,28,26 cells from each donor respectively) and 443 cells from 4 dis…
ghost updated
7 years ago