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Hi everyone,
I have samples from many years ago that were sequenced with 454 sequencing (reads of 150pb) and more recently samples that were sequenced with illumina (read of 250pb). I am confused abo…
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Hey awesome breakaway crew,
I m running breakaway on my own data and I ve come an error I can't really figure out.
running `breakaway(ps2)` returns
> Error in alpha_estimate(estimate = divers…
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**Description**
The error rewriting related to Index matching in `beta_phylogenetic` did not work for a user on the forum.
**Steps to reproduce the behavior**
Provide a table that has features no…
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Hi, I am not sure which value I need to give here to configure pipeline..Please suggest...
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A conda environment named MetONTIIME_env is created, where seqtk, porechop, pycoQC, Nano…
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**Describe the bug**
PD seems to lock up with starting window not progressing past "Step 1 of 1" and sometimes fails with error "failed (id:134133)"
**To Reproduce**
Steps to reproduce the behavi…
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Hi,
Running in an AWS Batch environment the fails with the message:
```Error executing process > 'alphaDiversity (1)'
Caused by:
Can't stage file file:///efs/yamp/tests/batch/null -- file does…
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**Is your feature request related to a problem? Please describe.**
@blackrim suggested that it would be useful for users to be able to compute phylogenetic beta diversity, similar to the R method "ph…
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It biases the output sequences, which I'm hoping to use for phylogenetics and diversity analyses. I know they won't be perfect under any circumstances (phasing was very imperfect), but I can't have th…
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This is not a bug in the software, more a concern with the underlying data. Because we don't rarefy, distance matrices calculated using something like `plot_distance` cause otherwise similar samples t…
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@rachaelgallagher @jmadin et al. I've added a use case for dataset registry review process
in our architecture document here: https://docs.google.com/document/d/1O-B4fJ-60URy_NODngD3j5NtrFfkzj94zFY…