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Looks like we have several CDSs without AA sequences in the database. Many of them match to labeled pseudogenes in RefSeq annotations. Not sure why they were called in the first place.
ACTION: Rem…
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_From @ValWood on September 23, 2018 7:25_
How do I access the exact human reference proteome dataset that is currently used by GO?
Is this it?
https://www.ebi.ac.uk/reference_proteomes
@…
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I have a text file of mouse genes with its MGI_ID (e.g. MGI:894679). However when I ran genewalk I receive errors : genewalk.gene_lists - Could not get HGNC ID for MGI ID although the code kept runnin…
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Entrez Gene ID Symbol Terms
390788 CCL3L2 chemokine \(C-C motif\) ligand 3-like 2
820 CAMP cathelicidin antimicrobial peptide
348249 CCL14-CCL15 chemokine ligand 14, chemokine ligand 15 transc…
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Hello,
I've assembled two bacterial genomes sequenced using Nanopore with Canu v1.5 on MacOS using the default settings and an estimated genome size of 2.5 mb. The assemblies have always finished …
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Hi!
I have uploaded the FASTA files and the gff necessary and I have published both the genes and mRNA.
They show up correctly as Tripal content
![Capture3](https://user-images.githubusercontent.co…
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Hi There,
I was wondering if it is possible to include other features such as pseudogenes in the Synima analysis?
Thanks
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Version: 0.5.2
Date: 2018-07-05
> library(HGNChelper)
> new.hgnc.table
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Variants:
- [ ] links rsABCD to cvicdb and GA4GH / UCSC, dbSNP
- [ ] make vertical lines into dots / with varying sizes / colors
#
Update Evidence tracks:
- [ ] implement using updated gene mo…
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When making a gene model from a full length RNASeq read, indels seem to be being interpreted as introns. Eg, when making annotations from the top two reads here:
![screen shot 2019-03-01 at 10 16 2…