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Hi,
So I install fusioncatcher and the data separately like this:
```
wget http://sf.net/projects/fusioncatcher/files/bootstrap.py -O $bin/bootstrap.py
python2.6 $bin/bootstrap.py --install-al…
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I have few problems with output:
1) I have 189 cases where same gene have ended up in different groups;
2) I have 15 cases where the paralogs couldn’t be split;
3) I have 36 cases where QC gives:
"Hyp…
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add product heirarchy here
announce to pombelist
Original comment by: ValWood
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The Orthology Working Group recommended that data be pulled directly from PANTHER. The Portal Use Case Working Group (PUC WG) has some questions about what data exactly to pull, and so we would like …
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Hi
I was wondering whether gubbins would be able to accurately detect recombination from a core gene alignment, implemented by Roary?
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We need to think pretty carefully about how to improve the selection/input for gene sets. Hard problem to solve properly. Right now it is very confusing and hard to see the impact of any selection on …
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Moving on from my earlier work, I am attempting to generate a "panplasmidome" using reference plasmid sequences from Genbank. Of course, as these plasmids are diverse, there is no real "core" to speak…
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I searched for ADH5 (human) and got back 15 human genes, but ADH5 wasn't among them meaning that I couldn't directly compare the annotations for human ADH5 to its orthologs in the other species. I th…
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I have just installed a new Biolinux8 workstation and included Roary (of course). It installed v. 3.6.5, and when I used it with a known Campylobacter coli test set, it claimed that there were 0 core,…
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Hi,
I'm attempting to package roary for GNU Guix. I think I'm most of the way there, however there is a number of test failures. I've put a log of the test failures here:
https://gist.github.com/wwoo…
wwood updated
8 years ago