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The "Graphical view" in the "Protein features" section should be hidden for pseudogenes. I think it used to be.
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Greetings,
I am trying to reproduce the test example. I have installed all of the required tools/packages.
As per the README, I am running the first step in generating the genome index (after do…
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Currently "pipelines" are represented internally as long UNIX commands or as R functions.
When we display this information, we'll want to have descriptive, intuitive, human-friendly ways of represe…
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Is there a reason that GTF files are munged beyond recognition in the RNA-seq workflow? They're fine as is for bulk RNA-seq and we can't even report that "we used Gencode m15" in the methods if we mod…
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Use tximport along with the gene-to-transcript mapping already contained within the processor to implement this part of the salmon pipeline:
![gene_level_counts](https://user-images.githubuserconte…
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mapping files
ftp://ftp.ebi.ac.uk/pub/databases/pombase/pombe/Mappings/
- [x] sysID2product.tsv
- [x] sysID2product.rna.tsv (current version contins proten coding psudos!)
- [x] allNames.tsv
…
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Hi All,
Is there a way to have more than 1 foreground lineage in RELAX. For example, we have a a phylogeny of a gene family with functional genes (outgroup), pseudogenes (ingroup), and re-functiona…
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Hello,
I'm using cnvkit v0.9.1 and I am confused about the negative log2 values for chrY that I get when comparing a female sample to a female reference.
I have built a female reference using a co…
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To avoid confusion about the original meaning (and any other interpretations, correct or incorrect) of "CDS", change the label to "start and end coordinates". Even if "CDS" would be technically correc…
mah11 updated
6 years ago
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[SRD5A2](http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=11285)
NM-transkript finns ej med i genlistan - dvs vi missar mutationer i denna gen (DSD panelen, OMIM-panelen etc)
ALLVARLI…