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Hello everyone
I have experience analysing suspension mass cytometry data using CATALYST. Now I'm trying to use the same pipeline to analyse imaging mass cytometry data which, after segmentation, I…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/julia-wrobel/VectraPolarisData
Confirm the follow…
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Add knn-based, expansion-based (BiocNeighbours) or other (Delauney, etc) graph construction wrappers until I find a better package to handle SingleCellExperiment and SpatialExperiment objects
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Add a new workflow chapter using `spatialLIBD` dataset/package.
This should include a description of the dataset, followed by a complete workflow, starting with loading the data as a `SpatialExperi…
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When I'm trying to run UMAP for a dataset that is SCTranformed, I had error saying
Warning: The following arguments are not used: drop
Error in h(simpleError(msg, call)) :
error in evaluating th…
zqsha updated
2 years ago
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Hello, when I attempt to download the data using
`sce
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Currently, the `imgSource` generic is not guaranteed to return a file path. It could return a path, or it could return a URL, or it could return `NA` (e.g., for a `LoadedSpatialImage`), or something e…
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Hi,
I'm working on updating `spatialLIBD` to match `SpatialExperiment` version 1.1.700 at https://github.com/LieberInstitute/spatialLIBD/commit/63911f463a0339cf3d0e719c8a51d7118cc670d7. I normally …
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Hi Helena & team
I'm trying to compensate IMC data. I have a set of single colour text files and a set of imc tonsil samples that I would like to compensate. I have used readSCEfromTXT() and some …
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I got this error with this example
```
mat