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Hi,
I am trying to generate sashimi plots using BAM files made from running rMATS on FASTQ files. I am using two files that hold my replicates.
My run:
python /Packages/rmats2sashimiplot/src/rm…
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Hi there,
I’m currently comparing the results of Clair3 v1.0.5 when alignments are stored within a BAM file vs CRAM. I am using HG002 replicates, and CRAM files were converted from the BAM file.
…
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Hi,
I manage to make snpArcher work on dataset with medium size genomes (400Mb) but I got errors for bigger genomes (2Gb) and when job are taking to much time and ressources. I think I set the slur…
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Hi,
I used clairs(v0.4) to call somatic SNV/InDel(tumor/normal paired), but the PASS variants number is ~6w. Is it normal?
Compare to deepsomatic, the somatic SNV/InDel number is ~1.7w.
Do you …
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We would like to combine fairy with [COMEBin](https://github.com/ziyewang/COMEBin) which naturally supports bam files. Do you think Bam could be supported ?
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hi, Can I get compy number between white blood cell bam and adjacent normal tissue bam. Is it suitable for samples between non-tumors?
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Hi, zhangkai:
I am using SnapATAC2-v2.7.0
Due to experimental issues, I obtained a poor quality dataset where R1 consists entirely of fixed sequences, with R1 mapping accounting for only 6.74% of to…
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# Issue Report
## Please describe the issue:
Is there a way to output a merged file when using a folder as input? Right now I'm using
```
dorado aligner --recursive (fasta reference) (read …
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Hi,
I ran the program using BAM files and encountered the following error. It seems that the program did not process the BAM files correctly. Could you please provide a more detailed explanation of h…
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Hi , bam file and reference are ok when I use the DNAscent detect parameter, but this error occurs at runtime. Like this :
Importing reference... ok.
Opening bam file... ok.
Scanning bam file...o…