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Hi! Thank you very much for making this dataset publicly available!
I am not familiar with microscope images and I am new in dealing with cell segmentations. I am probably misinterpreting the data b…
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Hello Sopa team,
Thank you so much for developing such a great pipeline for spatial analysis. I have been applying the Baysor segmentation pipeline to my CosMx dataset, and it has been working grea…
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Good day,
Below are the parameters I use for the prior segmentation:
```
n_clusters = 3 # Number of clusters to use for cell type segmentation. Default: 4
prior_segmentation_confidence = 0.96 # …
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Seems pretty easy (at least a lot easier than dualization so far...)
https://www.cs.umd.edu/users/hjs//pubs/reddyasae01.pdf
I guess you can do it simply based on Delaunay triangulation, and you …
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## Use Case
Scientists want to be able to visually inspect their data and mark cells of interest or bad segmentations, etc.
Being able to select many cells and save that list out afterwards (as a …
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Hi @constantinpape,
I am working on a new functionality to overlay any table column as text on the image:
Doing so it looks like as if the anchor points in the Platy cell segmentation tend…
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I am getting cell segmentations that look pretty bad, and I think it might be because of how I am preparing the videos. Screenshots of the cell segmentations on the raw bigTIFF video and the preproces…
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Hello everyone!
I have the results of custom cell segmentation and I am able to export them in `geojson` format. After that, I would like to use them to update the `vzg` file by applying the `vpt` …
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i want to use the third part software to do cellsegmentation and when i get the mask file. how can i update the ipr file to do the next saw analysis.
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Nicolas tried to segment a cell with an external program (ImageJ) and then loaded the binary masks in the segmentation step. It did not work. Can this be debugged?