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lots more people are doing comparisons between sourmash output and other tree/dendrogram/clustering approaches. it would be nice to better support that with nicer output formats.
we could also anno…
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Currently the Dash clustergram is restricted to clustering based on all row or column values. There are cases where I would like to sort my data based on a chosen metadata category, and then cluster …
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Given
```
hc
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## By marker type:
- [ ] SNP
- [ ] Sequence
- [ ] Microsatellite
Please refer to the issue number when making a pull request.
## Questions to address:
- What individual based distances exist?
- What …
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I'm trying to get more information on the clustering using the single_linkage_tree_ figure. However, I'm getting the error stack trace below on using the single_linkage_tree_.plot() method. I'm trying…
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Dear developers,
When I run `dRep` with the `-nc` parameter set to `0.6`, the program generates most output correctly but the PDF files of the secondary clustering dendrograms and MDS cannot be ope…
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I am using this library on a spike sorting project and would like to cluster neurons regarding their behavior after a given stimulus. The problem is, that some neurons are clustered into very small gr…
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Hi there!
I work with ecological data, in particular microbial ecology, and we cannot use Euclidean distance for comparing community dissimilarities (either using cluster analysis, PCoA, or NMDS) s…
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I just discovered pheatmap after using heatmap.2 for a while. In both tools, you can specify clustering settings. However, if I set those parameters to use the same algorithms, the resulting heatmaps …
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**Is your feature request related to a problem? Please describe.**
Clustergrammer2 can visualize matrices with ~10 million matrix cells, but slows down when there are too many columns or rows (>20,00…