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### Background
VisBOL is a genetic design visualization tool written in Javascript that runs in the browser. VisBOL can create this visualization by reading genetic design information encoding using…
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### Background
libRoadRunner (http://libroadrunner.org/) is a high performance SBML based simulator that exploits LLVM (http://llvm.org/) to achieve very fast simulation times. The current version …
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### Background
[BioPAX](http://www.biopax.org/) is a widely used pathway modeling and exchange standard language, supported by many pathway databases and used as an integration medium by [Pathway C…
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### Background
Online databases such as [BiGG](http://bigg.ucsd.edu) or [BioModels](https://www.ebi.ac.uk/biomodels-main/) provide a large variety of published models in SBML format. When building …
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### Background
clusterMaker2 is one of the most popular apps for Cytoscape. It provides a large number of attribute and network clustering algorithms that may be visualized in Cytoscape, including h…
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### Background
The [Systems Biology Simulation Core Library (SBSCL)](https://github.com/cogsys-tuebingen/SBSCL) is a collection of classes for simulating computational systems biology models in a Jav…
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### Background
GeneTech (extracted from **Gene**tic **Tech**nology mapping) is a tool which allows a user to generate genetic logic circuits only by specifying the logical function desired to be achi…
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### Background
LibRoadrunner is a high performance SBML based simulator that uses LLVM to generate very efficient runtime code. This enables libRoadrunner to simulate models on par with compiled C/C+…
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### Background
[clusterMaker](http://apps-dev.cytoscape.org/apps/clustermaker2) is a [Cytoscape](http://www.cytoscape.org) app that unifies different clustering techniques and displays into a singl…
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### Background
The BIMIB/DCB group at the Universita` degli Studi di Milano-Bicocca has constructed a series of algorithms and tools to study the Cancer Evolution from Single Cells in the context o…