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## Expected Behavior
When one runs addss.pl on a an alignment in a3m format, the first sequence should be taken as the reference sequence for the pdb structure.
## Current Behavior
The first seq…
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See [ParamAccess](https://github.com/proteinevolution/Toolkit/blob/vue/modules/params/src/main/scala/de/proteinevolution/params/ParamAccess.scala#L73).
We already talked about it some time ago.
It i…
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See [ParamAccess (line 103)](https://github.com/proteinevolution/Toolkit/blob/vue/modules/params/src/main/scala/de/proteinevolution/params/ParamAccess.scala#L103). The best approach would be creating …
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Currently, there are two issues with the result files of HHpred (and possibly other search tools):
- [x] The /results/alignment route doesn't work (See Query Template MSA Tab - we get a 404 not fou…
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From https://github.com/soedinglab/hh-suite/commit/c3567c8b8270ae89584f43d038b2bb40946002d7#commitcomment-25435936
> Can we please get an updated README?
>
>The current link to download pdb70 doe…
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The input MSA can be in the following formats: FASTA, CLUSTAL, A3M, or STOCKHOLM.
This applies to the following tools: HHpred, HMMER, HHrepID, and HHomp.
When the user goes back to using a single …
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the output I get is with weird code and no the pdb code
## Expected Behavior
good example from old run (good one):
No Hit Prob E-value P-value Score SS Cols Query…
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@ToniNittolo Write skeleton for this advanced tutorial. It should be housed under Additional Analyses.
**1. Background on the use of protein structure prediction tools to predict function**
- Pr…
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Currently the validation parameters defined in the new frontend are not being passed correctly by the backend (see ToolConfig.scala, a stub is inserted here at the moment).
There needs to be a way of…
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HH-suite dependency on psipred requires NCBI tools, including Makemat which is in legacy Blast but not Blast+.
It would make it easier when installing hh-suite if it could depend on the current ver…