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Even when using same as links from edges.tsv and _same_as_ and _xref_ columns from nodes.tsv to merge nodes, there still remain some duplicates. See attached figure with example of Kawasaki disease: a…
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Add a repair option to KGX that is similar to Robot repair.
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Add a KG subset/extract operation similar to Robot extract.
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Should we consider to add an attribute file to the KGX specification with the following columns:
- **attribute_id** - an id of the attribute
- **parent_id** - an id of an edge, node, or attribute …
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Hello KGX team:
Just passing along a friendly suggestion: it would be helpful if [kgx-format.md](https://github.com/biolink/kgx/blob/master/specification/kgx-format.md) could be updated to show ho…
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This seems to happen with multiple applications, but the most common crashes occur with firefox (unsnapped) and kgx.
With an external monitor hooked up to my nvidia GPU, there's a random chance th…
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I'm currently running `kg2-json_to_kgx_tsv.py` manually when the build is finished running. This should ideally be included in Rule TSV.
`Rule TSV` currently generates the TSVs for loading into Ne…
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The prefix_prioritization_map defines prefixes to be used to replace others in a clique merge:
https://github.com/biolink/kgx/blob/6645182e121c2e1172db862bba67cb114c963bed/kgx/utils/kgx_utils.py#L412…
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https://github.com/biolink/kgx/tree/master could be an option to rdf > tsv for ex.
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At the moment we have the ability to properly type some ontologies with their corresponding BM categories (e.g. MONDO classes get typed with biolink:Disease https://github.com/biolink/kgx/blob/b4e1e5e…