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Our Manhattan plots draw from the PheWeb codebase, with modifications.
PheWeb recently gained the ability to filter manhattan plots by variant type and annotation. We should investigate incorporati…
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Dear cuelee,
Hi, I have a question on Manhattan plot results based on PLEIO outputs.
I find a gap in a certain region of the output like this. I wonder if you have encountered any problem like th…
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Hi! This project is awesome, and I always get genetics knowledge from your blog or Zhihu website. Recently, I try to use this new tool to deal with summary data of GWAS and plot some pics. So I have a…
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Hi
I am wondering if you can help me. I used the A flag and have tried to run raisd in the directory with R. I have also checked that qqman is installed in R and I still cannot get a graph?
here i…
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I have experienced the error below when I run the example code using bayes results with hibayes package.
> data chr5 # visualize the results
> CMplot(chr5, plot.type = "m", width = 9, height = 5…
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Hello!
I keep getting this error when trying to run the manhattan plot function on fastman:
> fastman(data,chr="CHR",ps="BP",p="P",color = c("darkslateblue", "gold","#ff5733"))
Error in seq.default…
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Add in a gene name at the most significant peaks (previous/novel loci) 🔶
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Dear YuLab-SMU team,
Thank again for this new package very usefull and your wonderful work, but I have some problems:
I correctly loaded the MicrobiotaProcess to my R session, but with the tut…
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My data looks a little different than the one from the tutorial. I converted it from a pandas DataFrame to a NumPy array using this line of code:
`# convert dataframe to numpy array for assocplots
m…
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Hi,
Is the highlight.text feature not available in the circular manhattan plots? Ive even tried to run the pig60k dataset and just chnaged the plot type to "c" for a CM plot but no gene names are pl…