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Thanks for providing the SCENIC+ public motif collection PWMs , it is very helpful !
I noticed that the version of the motif collection is "V10: 2022 SCENIC+ clustered motif collection (v10nr_clust…
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Dear author,
I have downloaded motif files from JASPAR database and the format is like:
```
>MA0002.3 Runx1
A [ 123 57 0 87 0 17 10 131 500 ]
C [ 1072 …
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Hello, I recently ran turboGliph::gliph2 and I'm looking at the outputs - in $cluster_list there is a list of cluster tags like 'YQK_4_17'. I get that YQK is the motif, but what are 4 and 17 in this e…
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I have encountered this error:
```
ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif' (/opt/miniconda3/envs/celloracle/lib/python3.10/site-packages/gimmemotifs/motif/__init__.…
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https://www.iedb.org/
* Start of B-cell integration?
* Annotate proteins with the epitope as candidates similar to motif annotation?
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My motif is AUCG (RNA), why is the result of drawing ATCG? What should I change?
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Hi @ArtRand,
Per our recent conversation at the T2T consortium meeting, I was hoping for the option to add a few extra columns to the extract output in order to improve downstream processing in our…
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Hi,
Thank you for this tool, I tried the pipline you provided on my data, but during denovo detection, I got a lot of warning:
2024-11-24 20:55:02 [WARN] - Skipping invalid data in M
2024-11-24 20:…
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### Issue: `ValueError: No objects to concatenate` during `motif_enrichment_dem` Execution
```bash
scenicplus grn_inference motif_enrichment_dem \
--region_set_folder /n/sci/SCI-004375-NYUDATA/…
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Déclaration Repeq, à la page Récap voici les modifications à apporter.
- [x] Modifier le titre "Récapitulatif" par "Récapitulatif des écarts de représentation"
- [x] Mettre en gras les années dans …