-
Here are some of the features to (possibly) be included.
Priority:
- [x] Plot of gene expression per ROI
- [x] Differential gene expression analysis
- [x] Interactive plot (top DE genes)
- [x] …
-
Broad has release on dbGaP PCA on genotypes before imputation. Matching sample ID with self-ascertained ancestry information also found in dbGaP, I plotted PC1 vs PC2 below:
![officialpca](https://…
-
Hello,
I have a few suggestions that you might consider/ reject for future development of leafcutter and leafviz applications relating to support for export of results from both leafcutter and leaf…
-
Hello,
I am currently using your Somalier software to check for relatedness and uniformly calculate ancestry PCAs across several cohorts for a meta-analysis. Our cohorts are mostly individuals with…
-
Hello,
I am working on a PCA analysis of some populations for a conservation genetics project on a crayfish species. My DAPC analysis did not show significant structure between sites, so I thought …
-
Hi,
Thanks for providing Harmony for the integration of single-cell data.
When using `ElbowPlot` to select dimensions for downstream analysis, I noticed that there are ups and downs in the standa…
-
We want to support [Principle Component Analysis](https://en.wikipedia.org/wiki/Principal_component_analysis) as an advanced analytics option.
For an intro to PCA and how it looks in R it's worth l…
-
Hello, everyone,
I used pcadapt to identify environment-related outliers, but I obtained an excessive number of them. Is there anything I overlooked?
Best regards,
Sandy
PS: The code I used:
…
-
After #7 is complete, create a markdown that analyzes the data as follows:
1- PCA plot highlighted by metadata in syn26160053 (cell type, treatment)
2- Do Correlation enrichment analysis across _a…
-
- [ ] Identify high quality notebooks in PCS for business & eng.
- [ ] identify data to be used
- [ ] create initial directory.
Some sites to look at for initial analysis:
DATA8 http://data8.…