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Hi!
I 'm running FACETS in a pediatric leukemia cohort and half of these samples have null purity values (NA). The BAM files come from a whole exome sequencing at x30 depth and have very few numb…
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Ranged, Int, very long cooldowns, nuker.
Q **[Magic Bullet]** Sends unavoidable projectile at enemy. Deals damage. Base projectile Grants additional projectile for every 2 caster lvls. Delay bet…
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Define a boolean truth selector:
```
T(v1) = { c | zfit - ztrue | / (1 + ztrue) < v1 }
```
and a boolean data selector, for example:
```
D(v2) = { c (z68hi - z68lo) / 2 / (1 + zbest) < v2 }
```
T…
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Hi,
I have a dataset of NSCLC tumors that have both been whole-exome sequenced and RNA-sequenced. I have some more samples for which I only have DNA so I wanted to use ExTRECT to predict the T cell…
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I miss a PPI algorithm in EnMapBox, I suggest including it.
2 python implementations:
* pysptools https://pysptools.sourceforge.io/eea.html#pixel-purity-index-ppi
* https://www.spectralpython.net/c…
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### What is the expected behavior?
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It is surprising that when `-AcheckPurityAnnotations` and `-ArequirePrefixInWarningSuppressions` are supplied, purity warnings are prefixed by a specific checker name, such as "fenum:purity..." or "fo…
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We had a discussion in https://github.com/algorithm-archivists/algorithm-archive/pull/495 about the purity of functions. The argument is that for many algorithms, specifically numerical ones, the impl…
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Hi @xiasijian
I now have a task to analyze tumor samples for purity and ploidy. Our data mainly comes from wgs, wes and panel sequencing.
We tried absolute, ASCAT, sclust, sequenza, ichorCNA, etc.,…
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Clean up samweb datasets. In particular:
- test datasets
- datasets with few files
- datasets with no exisiting files
- useless datasets