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Hi Yang,
I am so glad that you have developed such an amazing software for expression quantfication of transposable elements. But now it occured a weird error in Count step, the script I used worke…
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Hi,
I am currently trying to run BadiRate but I always end up with the same error :
The command line always return the message : "WARN: Try using a more complex model, or changing the starting …
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Hello developers, I don’t know where to download TE_DB such as homo sapiens. Can you provide a way to download TE DB?
Thank you
TE_DB: "/path/to/database_TE.fasta" #Database of TE (…
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$ scTE
/public/home/zzs000213/.conda/envs/py3118/bin/scTE:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
__import__('pkg_…
l1y1y updated
4 months ago
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Hi Weilong,
I've notice that _--no-discordant_ option is always on. What's the reason for not reporting discordant mapping? Is it possible to disable this option?
Best,
Amira
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Currently, reports are in one folder, which is very helpful, but there are 4 files (report_general.html, report_MGEs.html, report_resistance.html, report_virulence.html) separately and I found myself …
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On protein domains page of tripal_domain module, the "Description" column have some hyperlink data missing which is enclosed in [] or ().
Andrew spotted this issue.See Andrew's email below for more …
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Hi,
I'm trying to run GraffiTE in the mode that bypasses the SV calling steps but it seems to get stuck at the tsd_prep step. I was wondering if you had any idea why?
```
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Some options that were mentioned on emails and community calls:
* [keywords](https://schema.org/keywords),
* [about](https://schema.org/about),
* maybe [measurementTechnique](https://schema.org/…
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Hi developer,
I just want to make sure I am on the right track to make my own index. Because repbase is not openable, I downloaded the fasta file from GENCODE (Genome sequence, primary assembly (GR…