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Nazia said that on GeneDB paralogs of a gene used to be listed. She said this was true for SPBCPT2R1.01c but this info has disappeared from both pombase and genedb (I can't see it in Artemis either bu…
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to
Swi5-Sfr1 recombinase mediator complex
Reported by: ValWood
Original Ticket: "geneontology/ontology-requests/5718":https://sourceforge.net/p/geneontology/ontology-requests/5718
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Dear all,
This is more a theoretical question rather than a practical one. Giving a ortholog group/family (OG) from a bunch of related species, where all Othologs + In-Paralogs are present, together …
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Hi,
I think that Prokka is a great program and I have been using it a lot lately. However, I think that prokka have problems handling crispr sequences.
I have run prokka with the following settings:…
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Hi Thibaut,
some random thoughts on the data structures, totally biased.
There are situations where you don not want to have filled up you missing data with gaps. For individually optimizing gene tre…
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Please add to the existing definition:
In Saccharomyces cerevisiae it includes the proteins IPL1, BIR1 and SLI15.
Thanks,
Birgit
Reported by: bmeldal
Original Ticket: [geneontology/ontology-reques…
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Currently we have:
``` r
> getClassDef("multidna")
Class "multidna" [package "apex"]
Slots:
Name: dna labels n.ind n.seq
Class: listOrNULL …
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Hi Daniel,
i am using Fusioncatcher, 0.99.4b version i could run fine on the test samples with the same build Ensembl 79 vesion. but when i ran with my RNA-seqdata, half way it threw Error saying cou…
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Nicole V. can help coordinate this, will let her know.
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- The data relationships are not handled in a way they will be unique.
See how the relationship between WHI3 and WHI4 is repeated 10 times in the data. The relationship between WHI3 and WHI4 should o…