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Author Name: **Matt Jones** (Matt Jones)
Original Redmine Issue: 277, https://projects.ecoinformatics.org/ecoinfo/issues/277
Original Date: 2001-08-31
Original Assignee: Matt Jones
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Hello, and apologies in advance for what is probably a very basic question:
I am working through the Moving Pictures Tutorial and I have gotten up to doing the diversity analysis. however when I ty…
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All of the options in the dropdowns should follow standard capitalization and spacing rules, and b alphabetized. Adding small hints for now, until Qiime2 gets better, should also reduce user confusion…
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It would be nice to be able to subsample a dataset (after the results of all other language filtering features BEASTling provides, like by family, by macroarea, etc.) to a specified number of langs (e…
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Ported from @antgonza's [comment](https://github.com/qiime2/qiime2/issues/235#issuecomment-298924297). Also came up on the forum in [this topic](https://forum.qiime2.org/t/core-metrics-without-phyloge…
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The Jensen-Shannon Distance (square root of the Jensen-Shannon Divergence) is a true metric distance with good statistical properties and biological interpretation. I was introduced to it by Mani Arum…
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This is for #6 and/or #7. I'm sure there is an established technique for this, but just not sure what it is. Any thoughts @jeffpowell2 ?
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(once tree/beta-diversity are finished/confirmed)
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Quick question, while I recognize that DADA2 is a _de novo_ method, I was wondering, if you assigned taxonomy via Greengenes reference database, if it was possible to use the tree provided by Greengen…
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Hi,
I'm trying to run beta_diversity_through_plots for ITS1 data in Qiime 1.9 using ghost-tree and and I'm not sure that it is working correctly. No errors come up, but I have left script running f…