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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/lmweber/nnSVG
Confirm the following by editing ea…
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https://mp.weixin.qq.com/s/fH-qz71vsyy9WeDI3ByNlA
ixxmu updated
2 years ago
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Hi,
Our understanding (@bpardo99 and mine) is that `colData(spe)$sample_id` is where the sample names are stored. For example, as discussed at https://github.com/drighelli/SpatialExperiment/blob/ma…
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At the moment when building the spatialCoords and spatialData from the colData the object still stores the coordinates into the colData, a possible solution could be to drop them when storing elsewher…
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We are currently getting duplicated columns in `colData` when adding new columns in `colData` using external tools such as `scater::addPerCellQC`.
This is because `colData` includes all the `spatia…
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Dear maintainers,
We have been working on an R package (ExperimentSubset) that allows efficient storage and retrieval of subsets of Experiment data that particularly focuses on provenance tracking.…
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I was testing this out and I didn't want to run Spaceranger, so I just downloaded files from 10X's webside and reconstructed the SRanger output directory structure. This worked okay up to a bizarre er…
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Hi Dario,
We're seeing this error occur in the `SingleCellMultiModal` vignette:
http://bioconductor.org/checkResults/devel/data-experiment-LATEST/SingleCellMultiModal/rex3-buildsrc.html
```r
--…
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Hello Bioconductor team! I recently updated BiocManager from 1.30.12 to 1.30.13 and when I go to update packages via `BiocManager::install("mypackage")` I will either get an error with something like …
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When I create an object with the constructor `SpatialExperiment()`, I get an error due to the checks for the sample IDs.
The error occurs even when using the default sample ID of `Sample01`. I'm no…