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From @JoelRichardson
> We have just discovered an issue with our Homologene and Panther loads.
> There are about 500 instances where an MGI marker is in a panther or homologene cluster (legitimately)…
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For example, transcript ENSMUST00000141797 of GRCm38 is non-coding, so there is no sequence attribute. However, the sequence of the transcript is available in a fasta file. E.g. look under the ncRNA c…
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Why is the word 'transcript' appearing automatically as part of the name for the transcript of a pseudogene? (see figure below). This should not be the case. Numbering / IDs should be generated in the…
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All network files should have the same id type. Discuss
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@nathandunn some of your updates to the [TestScript](https://github.com/GMOD/Apollo/blob/master/docs/TestScript.md) need clarification.
In docs/TestScript.md
- 1.3) Check that the organism pref…
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A) Testing functions in the main window
1. Switch between organisms:
- [x] 1. 1) Check that you can change organisms from the upper left-corner drop-down menu.
- [x] 1. 2) Check that you can sw…
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Hi,
I am running roary (3.6.2) on a set of ~200 Prochlorococcus genomes. I annotated the genomes with Prokka, and did get 326414 proteins. However, when I run roary on the gffs, clustered_proteins on…
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But the alignment file not renamed? The `pir` and `msf` files were also renamed.
Are sequences for the DPA2 pseudo gene forthcoming?
This isn't a technical issues just a consistency issue.
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The search for the pseudogene fig|1520703.3.pg.50 with it's ID does not return anything.
vvons updated
8 years ago
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Transferred from GO helpdesk:
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https://www.ncbi.nlm.nih.gov/pubmed/?term=17984056
Hello,
I don't know what annotation team to pass this on to. PMID:17984056 seems to
have quite a…