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The goal of this ticket is to prototype FAIRification process for datasets that in ArrayExpress and GEO but don't exist in either DCP or SCEA
Proposed datasets
https://www.ebi.ac.uk/arrayexpress/…
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Many FindMarkers() results will return genes that are expressed heavily in all clusters involved for some reason and other genes are not very useful for phenotyping because of the lack of literature o…
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the parsed content from the PDF is presented 2x in the editor https://poster.jellypbc.com/posts/injectable-biodegradable-chitosan-alginate-3d-porous-gel-scaffold-for-mrna-vaccine-delivery
pdf: http…
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Dear inferCNV developers,
I am running inferCNV tool to infer CNV from multiple myeloma patients using 10x SC-RNA-seq data. In multiple myeloma, the plasma cells are the tumor cells and we would bel…
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In a recent submission pending acceptance, I made a stupid error and wrote 'opposed by counterflows' when I should have written 'accompanied by flows'. Would you mind correcting it? The Abstract shoul…
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Have defined my cells which I want to focus on from the Seurat object in form of a vector. I did prepare two vectors using CellSelector and another one directly by FetchData function. When I run TSNEP…
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Background: In a longer text (e.g. full-text article), there are often several variations of the same interaction mentioned. This is likely to be the norm rather than the exception.
Issue: In the …
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Hi,
I want to explore the micro enviroment of some nucleotide.
I saw how can i get the element of this nucleotide. let it be E1
i still need some help with
1.How can i get all neighbors of E1 in s…
bzudi updated
5 years ago
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We need to assign a cell type to each single cell, in order to select interesting populations and to be able to test the data integration tools.
possible methodologies:
* [SingleR](https://github…
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You should briefly mention epigenetic cell type deconvolution. This is actually expected to work even better than transcriptome data and comes with it's own set of deconvolution methods. I would argue…