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Hi,
So I install fusioncatcher and the data separately like this:
```
wget http://sf.net/projects/fusioncatcher/files/bootstrap.py -O $bin/bootstrap.py
python2.6 $bin/bootstrap.py --install-al…
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Hi Matt,
I created this issue for us to discuss the alignment algorithm choice, as I remembered I didn't want to bury discussions in email. So, I will try to use the issue tracker more judiciously!…
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'GMNN' is not found in the E2F4 data post parsing even though it ought to be.
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The preliminary alignment (Jan 1, 2017) of Mesostigmata contained large gaps.
Sally to check into this:
Is the beginning of the alignment correct?
Is there any information relevant for this …
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Hi Again,
I had to track down why one of my cases wasn't getting any results, here's what I found:
Topiary was outputting no epitopes, without a clear error message. I saved the temporary peptides …
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Hello,
I'm realy interested to use this program on my analysis but the same errors reported here are ocurring on my custom gtf file of putative long non-coding RNAs.
Spectre works fine with complete…
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When trying to retrieve GFF3 files from pseudogenes, using any of the available methods (right-click menu over the genomic pseudogene, the 'Save track data' option, export GFF3 from 'Annotator Panel')…
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Hi Daewhan,
We have encountered a scenario where reads aligning to two tandemly repeated genes (here in the yeast genome) get preferentially placed to only one of the copies (top data track, left), s…
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When performing an UNDO operation on a pseudogene, the annotation disappears. On refresh of the page, the user created annotations track show the following error:
This is mostly due to the improper…
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Proposed by: Michael
Background: Brugia contains horizontally transferred genes. As the author spent quite a bit of work to add additional information for pseudogenes, I would like to add them as tags…