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Currently when I create an object from scratch using the `SpatialExperiment()` constructor, it gives an error when using custom column names in `spatialData` - e.g. see error message below when I use …
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To do:
- [x] format sample names as `sample_01` instead of `Sample01` (in `colData` and `imgData`)
- [x] format `in_tissue` as numeric (default from Space Ranger) instead of logical (in `spatialCo…
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Dear maintainers,
I tried to install the development version (Bioc 3.13) of this package but received the following error:
```
Bioconductor version 3.13 (BiocManager 1.30.10), R Under developme…
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Hi @HelenaLC ,
when I run `sce
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As discussed during and after EuroBioc2020 BoF workshop: re-structure the class as follows:
- main (virtual) super-class called `SpatialExperiment` (which is not directly used by users)
- sub-clas…
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Read in the low resolution images and create a tibble for them. That involves code like https://github.com/LieberInstitute/HumanPilot/blob/7e0f25188969913bc247b5d6c1c47c3ad94c6f15/Analysis/Layer_Noteb…
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I'm writing the `cbind` method, but I'm confused on how the `int_metadata` are cbinded into the SingleCellExperiment class producing multiple lists, one for each object passed as argument to the `cbin…
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Hi Jonny,
Me again. MouseGastrulationData is giving an error about the format of some objects that I guess is expecting are data frame objects:
```
select_samples sessionInfo()
R Under developm…
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Now that we have both `spatialData` and `spatialCoords` accessors, we should also think about consistency for the `SpatialExperiment` constructor.
E.g. `spatialCoords` accessor returns a matrix, bu…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/HelenaLC/TENxVisiumData
Confirm the following by …