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We had discussed some ways to annotate pseudogenes. It seemed as though the major problem was that pseudogenes were either initially being annotated wrong (drag and drop default) or that further evid…
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Throughout the text, we mention total number of histones genes and unique proteins. Such number does not include H1. Once upon a time, the text said something about referring to canonical core histone…
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I have been using Prokka to annotate de novo generated whole genome sequences of bacteria, based on species or a trusted database of proteins. I use the GBK output of Prokka to import the genome seque…
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На тесте:
./ig_repertoire_constructor.py --test --no-pseudogenes -C kappa
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Currently there is an option to define complete coding sequences, i.e. terminal start and stop codons with no internal stop codons. It could be useful to be able to have an option to define based on …
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The figfam member list page, the one that is linked from the figfam id on the genome overview page,
currently lists both CDSs and pseudogenes. Please change it to show only CDSs.
-Maulik
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add zfin geno-pheno data:
http://www.zfin.org/downloads
we currently take in the:
http://zfin.org/downloads/Morpholinos.txt
http://zfin.org/Downloads/phenotype.txt
http://zfin.org/Downloads/pheno_env…
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I am a new user of HyPhy, so my doubts may be a bit naïve. Years ago a collaborator did an analysis with HyPhy in a Drosophila gene that transposed from an autosome to the Y chromosome , and then ma…